Software

Some of the downloads below are protected by a password. Please send an email to apopel@jhu.edu to request access.

All the codes related to multiscale modeling of hepatocellular carcinoma are available at the our GitHub page here.

For CancerImmuneABM click here.

2013

Compartment model predicts VEGF secretion and investigates the effects of VEGF trap in tumor-bearing mice.
Finley SD, Dhar M, Popel AS.; Front Oncol.; 2013; PDF not available

2012

GeneHits
GeneHits is a graph diffusion-based algorithm to expand on known molecules to construct the protein-protein interaction network.
Chu LH, Rivera CG, Popel AS, Bader JS.; Constructing the angiome: a global angiogenesis protein interaction network; Physiol Genomics; 2012; PDF not available
Software not available.